![]() ![]() Plant Cell 9(5):689–701Įtchells JP, Mishra LS, Kumar M, Campbell L, Turner SR (2015) Wood formation in trees is increased by manipulating PXY-regulated cell division. This pipeline analyzes a time-lapse experiment to identify the cells and. Turner SR, Somerville CR (1997) Collapsed xylem phenotype of Arabidopsis identifies mutants deficient in cellulose deposition in the secondary cell wall. CellProfiler can be used to analyze the resulting images from imaging flow. Mussadiq Z, Laszlo B, Helyes L, Gyuricza C (2015) Evaluation and comparison of open source program solutions for automatic seed counting on digital images. The pipeline is entirely build on open source tools. The segmentation pipeline is accompanied by the imcsegpipe python package building up on readimc as well as customized CellProfiler modules, which facilitate the analysis of highly multiplexed images. In the present study, to examine whether intracellular proteins can be discriminated using a combination of CellProfiler and ImageJ, we analyzed neuroblastoma and monocytic cell lines, and. This feature reduction step is followed by standard image segmentation using CellProfiler. Here, we describe CellProfiler 3.0, a new version of the software supporting both whole-volume and plane-wise analysis of three-dimensional (3D) image stacks, increasingly common in biomedical research. Jiang Y, Qi X, Chrenek MA, Gardner C, Boatright JH, Grossniklaus HE, Nickerson JM (2013) Functional principal component analysis reveals discriminating categories of retinal pigment epithelial morphology in mice. Analytical pipeline, which is used for various analysis application, of CellProfiler, an open-source software for cell imaging analysis, is very important. CellProfiler has enabled the scientific research community to create flexible, modular image analysis pipelines since its release in 2005. Wählby C, Kamentsky L, Liu ZH, Riklin-Raviv T, Conery AL, O’Rourke EJ, Sokolnicki KL, Visvikis O, Ljosa V, Irazoqui JE, Golland P, Ruvkun G, Ausubel FM, Carpenter AE (2012) An image analysis toolbox for high-throughput C. National Institutes of Health, Bethesda, MD, USA. Carpenter AE, Jones TR, Lamprecht MR, Clarke C, Kang IH, Friman O, Guertin DA, Chang JH, Lindquist RA, Moffat J, Golland P, Sabatini DM (2006) Cell Profiler: image analysis software for identifying and quantifying cell phenotypes. ![]()
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |